The key to analysis of simulation datasets is software infrastructure.  Below are my packages, packages I contributed to, and some all time favorites. Some tutorials are also available.

PRIMARY DEVELOPER:
Python Environment for Reaction Mechanism/Mathematics
http://github.com/barronh/permm

Python-based Process Analysis
http://github.com/barronh/pypa

PseudoNetCDF Python Library
http://github.com/barronh/pseudonetcdf


Python-based Kinetic Pre-Processor

GEOS2CMAQ (obviated by pseudonetcdf's pncglobal2cmaq script)



CONTRIBUTOR:
NetCDF Java Library
http://www.unidata.ucar.edu/software/netcdf-java/

Python-based Performance Analysis Supporting System
https://dawes.sph.unc.edu/trac/pyPASS

Dynamically Simple Model of Atmospheric Chemical Complexity

Wisconsin Horizontal Interpolation Program for Satellites

matplotlib
Subpages (1): Tutorials
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